PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36501.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 205aa    MW: 22970.9 Da    PI: 6.5175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36501.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.91e-1581373128
           NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk...kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                   +G+ F+Pt  elv++yL +++      ++   +++ vd++++ P++Lp    + +   + w +fF+ +   +   + ++   + g W   g +k+ +
  MLOC_36501.1   8 AGYVFQPTGRELVDHYLIPRAGLGGdiFPG-LIVEGVDVLSLRPRELPFspdHKRDYGEVWgFFFAAKIAGE---TCPTP-GAGGCWVRYGPEKAYY 99 
                   799***************998777633344.459999**********9534322233457766666654433...23333.458************* PP

           NAM  94 sk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    + ++e+v  ++ ++++   ++ + g+ t+W m+eyrl
  MLOC_36501.1 100 GEgGREVVAFRRRFAYHftWNDGEVGSPTRWRMKEYRL 137
                   996677899*******96556889999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-193143IPR003441NAC domain
PROSITE profilePS5100523.2516166IPR003441NAC domain
PfamPF023651.1E-118137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MANPNLGAGY VFQPTGRELV DHYLIPRAGL GGDIFPGLIV EGVDVLSLRP RELPFSPDHK  60
RDYGEVWGFF FAAKIAGETC PTPGAGGCWV RYGPEKAYYG EGGREVVAFR RRFAYHFTWN  120
DGEVGSPTRW RMKEYRLNRD AAAFRSAHPG PEAPGVVFVV HKVYRKPMIP QPPPSDSSSS  180
EEEDSEHYIV DPRLDEIMRK LSEGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158486.19e-97NAC transcription factor NAM-B2-like
TrEMBLM0VQU21e-148M0VQU2_HORVV; Uncharacterized protein
STRINGMLOC_36501.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.17e-09NAC domain containing protein 4