PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36533.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 548aa    MW: 60953.9 Da    PI: 6.1647
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36533.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.76.9e-1261805471373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++++++c +av+++d   +q l+++l +l+s +gdpmqRl ay++e+L arl+ ++s+lyk+l+++e +   sse +++++l+ e++P++kf+++ 
  MLOC_36533.2 180 LKQVIIACGKAVAENDI-YTQVLISELGQLVSVSGDPMQRLGAYILEGLVARLSFTGSRLYKSLKCKEPT---SSELMSYMHLLCEICPFYKFGYMS 272
                   57899********9876.68*************************************************9...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN aI ea++ge+ +HiiDf+i qG QW++++qaLa+Rp+gpp+lRiTg+++++s   +   l  +g +L+++ ++ g+pfefn+ v+ + +++ l+
  MLOC_36533.2 273 ANGAIAEAIKGENLIHIIDFQIAQGSQWITIIQALAARPGGPPRLRITGIDDSNSAyaRGGGLDMVGTKLHNVSASYGLPFEFNA-VHAASHEVYLQ 368
                   ****************************************************988899999************************.688899999** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+++pgE+++Vn+++qlh+++desvs+e++rd+++++vkslsPkvv++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ ri+ E+++
  MLOC_36533.2 369 HLDIRPGEVIVVNFAYQLHHTPDESVSMENHRDRIVRMVKSLSPKVVTLVEQESNTNT-PFFPRYLETLDYYTAMFESIDVALPRDDKRRISTEQHC 464
                   ********************************************************75.7889********************************** PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   ++r+ivn++acegaer+erhe ++kW+ r+ +aGF+p+pls+ +++++k+ll+ ++s  yr+ee++g l+lgWk+r Lv+ SaW
  MLOC_36533.2 465 VARDIVNLIACEGAERVERHEVFGKWKTRFAMAGFRPYPLSSVVNNTIKTLLNSYHSC-YRLEERDGVLFLGWKSRVLVVSSAW 547
                   ********************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.422154529IPR005202Transcription factor GRAS
PfamPF035142.4E-123180547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MSHKVAITSM SAKASERTYR CSDDSQMAYY NNSVPLAENG RFYMMQNQLD AHYTSSGDGS  60
QKISSNPQIF EAQYCTLESS SANGTYPTQS STSSHSISPI SGSPLSQHDS YSYHTYDSPP  120
TVSCVTEIPD LQSKLKELEN AILGPELDIA SDSPESLLQA NNPLKQDDWR QLLGINTGDL  180
KQVIIACGKA VAENDIYTQV LISELGQLVS VSGDPMQRLG AYILEGLVAR LSFTGSRLYK  240
SLKCKEPTSS ELMSYMHLLC EICPFYKFGY MSANGAIAEA IKGENLIHII DFQIAQGSQW  300
ITIIQALAAR PGGPPRLRIT GIDDSNSAYA RGGGLDMVGT KLHNVSASYG LPFEFNAVHA  360
ASHEVYLQHL DIRPGEVIVV NFAYQLHHTP DESVSMENHR DRIVRMVKSL SPKVVTLVEQ  420
ESNTNTPFFP RYLETLDYYT AMFESIDVAL PRDDKRRIST EQHCVARDIV NLIACEGAER  480
VERHEVFGKW KTRFAMAGFR PYPLSSVVNN TIKTLLNSYH SCYRLEERDG VLFLGWKSRV  540
LVVSSAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-591825476374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36533.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180371.10.0scarecrow-like protein 21
RefseqXP_020180372.10.0scarecrow-like protein 21
RefseqXP_020180373.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLM0VQY10.0M0VQY1_HORVV; Uncharacterized protein
STRINGTraes_5BL_700283665.20.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]