PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36596.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 163aa    MW: 18951.2 Da    PI: 10.1482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36596.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-092148126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                  +k ++C  ++r+   tC++G  C+F+H+
  MLOC_36596.4 21 WKSAICGEYMRSRfkTCSHGVACNFIHC 48
                  799************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018487.1E-9226IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.3142050IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-62148IPR000571Zinc finger, CCCH-type
PRINTSPR018487.1E-94052IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MNGRYFAGKQ ITCEFVALTK WKSAICGEYM RSRFKTCSHG VACNFIHCFR NPGGDYEWAD  60
WDNPPPKYWT RKMAALFGPS DDAVFDKASD APDFERLHSS DRKRLRSSDG RYISSRHRDG  120
DAHKRHSSRV FSHSKQEQSN YIMKYGHTRH SREPSTAKKQ RGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36596.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618180.0AK361818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1150D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147330.11e-104zinc finger CCCH domain-containing protein 16
SwissprotQ6YVX93e-69C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A287SIT71e-119A0A287SIT7_HORVV; Uncharacterized protein
STRINGMLOC_36596.91e-116(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]