PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_36612.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 1001aa MW: 110273 Da PI: 8.8366

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_36612.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	311	330	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C++ H+ MLOC_36612.1 311 CHEFVK-GRCSRGASCRYVHD 330 9***.***********7 PP
2	zf-CCCH	23.8	7.7e-08	368	388	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H MLOC_36612.1 368 RPCKFFAE-GRCRRGETCPYLH 388 89****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.032	223	247	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.906	226	248	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.023	305	332	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.087	306	331	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.821	364	391	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.5E-6	365	390	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-6	366	389	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	368	389	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	368	388	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD GGDIPTQDLT NDNGKRVGES 60 SNLKPDAFMH QGSTECEEER TDGLNKDVKE RQSKASSERS HAPRMAEEGH NNDDWGKLAL 120 EKTTGNQGMS RNADDRRRGD GWGTAVSRGY SSRVSSGPDA WKQRTRSPSP RGGAWNRSRR 180 NGSDSRSRSR ERGRGRSRSR SRSPYFDRGS DWRAERGRIS GGPSLLCRDF TAGRCRRGLH 240 CRFPHEDGGR RQFDEPYPAD SRERYGHQNK DFLDPREPDD YVRSRQPRGH FDEGTWERSE 300 PRRDYRPSDQ CHEFVKGRCS RGASCRYVHD ESASHVGWRD DARETAHVRG GPDLSYGNRT 360 EHRREPKRPC KFFAEGRCRR GETCPYLHED APQSQMGPGA SDEPPKYSGG RTPRGNYSNW 420 GEETNGTHAG SHILSRDDRE NPDSQHTARS DTGYGYKNRQ LEDAGRDQYQ IIPQEDFGSQ 480 GRNKPEMAAP KQQQFLSPIQ TSGDSMNNDK VSGMDGLGAS ATTGNLSMQT GRHAPNLLDG 540 QSLSQIAQSQ DAVPQTSGAP IHPVTSQQQD STSMLPFNNQ QHESNFSLHP NRQDQFSNFS 600 LHPSRQDQFV ASQATANNSA PSMQNQPVAV PYMGQGPHSY TLGSQALPAF SGHTFSVAGQ 660 VPQDRPTPFY AGQSQATVER SNPSQEGGTQ SMQNTHSFQP VAPNMQAHSQ ALQGLSAVPN 720 QGIGTQSIHN THNFQPVASP YMQNRGQTLQ GLSILPSSTS AAMSGAPPVP PNEEEIRRSL 780 TSLAATLRMQ PGTVAGLQLP QTILNPSLMT SLSDVEPSQW SWVQQQQAGT AQPAQQQQAG 840 TTQLAQSEQQ APQQTLPAPS TAVGTSNGNP APQLVGQTAA TSVVTAPPPS ENKKVETKAK 900 DSDGEQDGDK NKKGNKEESK ALKMFKLALA DFVKDALKPT WKEGQLTREV HKTIVKKVVD 960 KVTSTVENIP PTKEKIDVYM SYSKEKLSKL VQAYVGKYVK A

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD GGDIPTQDLT NDNGKRVGES  60
SNLKPDAFMH QGSTECEEER TDGLNKDVKE RQSKASSERS HAPRMAEEGH NNDDWGKLAL  120
EKTTGNQGMS RNADDRRRGD GWGTAVSRGY SSRVSSGPDA WKQRTRSPSP RGGAWNRSRR  180
NGSDSRSRSR ERGRGRSRSR SRSPYFDRGS DWRAERGRIS GGPSLLCRDF TAGRCRRGLH  240
CRFPHEDGGR RQFDEPYPAD SRERYGHQNK DFLDPREPDD YVRSRQPRGH FDEGTWERSE  300
PRRDYRPSDQ CHEFVKGRCS RGASCRYVHD ESASHVGWRD DARETAHVRG GPDLSYGNRT  360
EHRREPKRPC KFFAEGRCRR GETCPYLHED APQSQMGPGA SDEPPKYSGG RTPRGNYSNW  420
GEETNGTHAG SHILSRDDRE NPDSQHTARS DTGYGYKNRQ LEDAGRDQYQ IIPQEDFGSQ  480
GRNKPEMAAP KQQQFLSPIQ TSGDSMNNDK VSGMDGLGAS ATTGNLSMQT GRHAPNLLDG  540
QSLSQIAQSQ DAVPQTSGAP IHPVTSQQQD STSMLPFNNQ QHESNFSLHP NRQDQFSNFS  600
LHPSRQDQFV ASQATANNSA PSMQNQPVAV PYMGQGPHSY TLGSQALPAF SGHTFSVAGQ  660
VPQDRPTPFY AGQSQATVER SNPSQEGGTQ SMQNTHSFQP VAPNMQAHSQ ALQGLSAVPN  720
QGIGTQSIHN THNFQPVASP YMQNRGQTLQ GLSILPSSTS AAMSGAPPVP PNEEEIRRSL  780
TSLAATLRMQ PGTVAGLQLP QTILNPSLMT SLSDVEPSQW SWVQQQQAGT AQPAQQQQAG  840
TTQLAQSEQQ APQQTLPAPS TAVGTSNGNP APQLVGQTAA TSVVTAPPPS ENKKVETKAK  900
DSDGEQDGDK NKKGNKEESK ALKMFKLALA DFVKDALKPT WKEGQLTREV HKTIVKKVVD  960
KVTSTVENIP PTKEKIDVYM SYSKEKLSKL VQAYVGKYVK A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	201	RGRGRSRSRSR
2	193	201	RGRSRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_36612.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249720	0.0	AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174956.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X1
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	M0VRC0	0.0	M0VRC0_HORVV; Uncharacterized protein
STRING	MLOC_36612.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-09	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]