PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36657.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 133aa    MW: 14190.5 Da    PI: 9.7953
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36657.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.35.4e-12103124122
                   ---SS-EEEEEEE--TT-SS-E CS
          WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                   ldDgy+WrKYGqK vk+++fpr
  MLOC_36657.2 103 LDDGYRWRKYGQKAVKNNNFPR 124
                   59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-1388125IPR003657WRKY domain
SuperFamilySSF1182901.96E-1095126IPR003657WRKY domain
PROSITE profilePS5081112.85198124IPR003657WRKY domain
SMARTSM007746.0E-4103130IPR003657WRKY domain
PfamPF031062.1E-8104127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MENYPILFGT QPSSSTSNSY HFVAGASSHH HGQAAGNNTG GGLFSASKQE EPSDGGGGDD  60
GAGSSSQGGG GEADVVVVGK KKGEKRERRP RFAFQTRSQV DILDDGYRWR KYGQKAVKNN  120
NFPRFVFVNP IVP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36657.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404110.0DQ840411.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 12 (WRKY12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165705.13e-54probable WRKY transcription factor 75
TrEMBLM0VRK35e-92M0VRK3_HORVV; Uncharacterized protein
STRINGMLOC_36657.13e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-14WRKY DNA-binding protein 75