PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37425.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 261aa    MW: 29578.3 Da    PI: 8.0766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37425.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-09181227347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       WT eE  +lvda+  +G g+W+   ++      Rt+k++ ++w+++
     MLOC_37425.1 181 HWTSEEVNKLVDAISAHGAGQWAELKKERFpeSVRTAKHLTDKWRNL 227
                      6***********************9987556*77***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.654174232IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-10175229IPR009057Homeodomain-like
SuperFamilySSF466897.48E-11176230IPR009057Homeodomain-like
SMARTSM007174.9E-5178230IPR001005SANT/Myb domain
PfamPF002492.4E-6181227IPR001005SANT/Myb domain
CDDcd116603.37E-14182229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEVYSTSLDY DNTDFQALLE GPQDEHDLDR LLKCAFNPTY IKELEFYSPT SDHGMTIQTF  60
APATPEALLE KEEAHATMAL IGEGGEYGEG GEREVMKEGG GSMYTQPCHR RSRRLAPTTT  120
SPKEGPCDLP DYMPKSGWTH KSRVRSARKR GTWSINTKPC SRDVCSVCEG QKHGRRRNND  180
HWTSEEVNKL VDAISAHGAG QWAELKKERF PESVRTAKHL TDKWRNLVKA FTGNVKRRIS  240
PHLDKDCIEK IQRLAAVYPL K
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37425.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193059.11e-94uncharacterized protein LOC109778885
TrEMBLA0A287XVM10.0A0A287XVM1_HORVV; Uncharacterized protein
TrEMBLM0VUQ40.0M0VUQ4_HORVV; Uncharacterized protein
STRINGMLOC_37425.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1950923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-12TRF-like 6