PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37511.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 251aa    MW: 26655.6 Da    PI: 6.4143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37511.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.4e-07202243955
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + RR+ri +++  L+el+P+       K++ +++L kA+ Y+k +q
  MLOC_37511.1 202 AKTRRERIGERLRVLQELVPNG-----SKVDMVTMLDKAITYVKFMQ 243
                   589******************5.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-11192248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.119193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9193246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-10199246No hitNo description
SMARTSM003537.4E-9199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-4203243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MALVGQPATF CYDGFVGDGA PAFMDVGFGY GYDHHSHLLE EECLLGSHAH GWELPTGNLG  60
AGAPGSINTF VGHDVGWTRP AGRMSSSSSV LAFDSQGEDN CAAATWMDMD AVDQLSYSPS  120
TAPAAAAPAG SFSFEGCGGN DRTAASPSHK RPRAHAEAQR GTDQESTTPP KKQCGGDRKS  180
AVKPTKTSAT TSSTKDPQSD AAKTRRERIG ERLRVLQELV PNGSKVDMVT MLDKAITYVK  240
FMQLQLTVHI Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158740.11e-143transcription factor bHLH69-like
TrEMBLA0A287WCB00.0A0A287WCB0_HORVV; Uncharacterized protein
STRINGMLOC_37511.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-23ROOT HAIR DEFECTIVE6