PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37645.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 383aa    MW: 42525.2 Da    PI: 9.0783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37645.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-102248127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  ++++ C +++rtG C++G +C+F+H++
  MLOC_37645.1 22 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 48
                  5789*********************97 PP
2zf-CCCH38.32.3e-126993327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C+++++tGtCk+G++CkF+H++
  MLOC_37645.1 69 QPECQYYLKTGTCKFGPTCKFHHPR 93
                  799********************96 PP
3zf-CCCH38.42.1e-12115139327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C ++++tG+CkyG++CkF+H++
  MLOC_37645.1 115 ERECAYYLKTGQCKYGNTCKFNHPE 139
                   799********************96 PP
4zf-CCCH34.82.8e-11276301227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C ++ +tG Ck+G+ CkF+H++
  MLOC_37645.1 276 DQPECIYYIKTGDCKFGAVCKFHHPR 301
                   689*********************96 PP
5zf-CCCH41.91.7e-13321347127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++elC+f++r+G+Ck+G +CkF H++
  MLOC_37645.1 321 PGEELCKFYSRYGICKFGVNCKFDHPM 347
                   689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7092149IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-52148IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-82348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-52650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-42748IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-66693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6946694IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-106993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-67095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-57294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568112140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6112138IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5112139IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5118138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019274302IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071274301IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5277301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971320348IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7320347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6322347IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5324345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MWQQMTMNSG VTMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK  60
GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNALGYP LRPNERECAY  120
YLKTGQCKYG NTCKFNHPEI FNAVASSRGS PIYPPVHTSG STGPHSYTGT MASWTYPRGS  180
FIPSPRWQSP SNYTPMIVPQ GLVQVPSWNS YPGQMVPVSS PESRLQSPGA QQYYGTSRQG  240
EGSAGNQGMQ SPYRSSSFPV PQYALQRENV FPERPDQPEC IYYIKTGDCK FGAVCKFHHP  300
RVRSQPPPDC ILSPMGLPLR PGEELCKFYS RYGICKFGVN CKFDHPMAAP MGVYAYGYSA  360
SASPNAPMAR RLLESPSGSA YAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLF2DVM80.0F2DVM8_HORVV; Predicted protein
STRINGMLOC_37645.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]