PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37646.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 181aa    MW: 20322.1 Da    PI: 8.357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37646.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000341124114
                  EEETTTTEEESSHH CS
       zf-C2H2  1 ykCpdCgksFsrks 14
                  +kC++C+ksF++k+
  MLOC_37646.2 11 FKCSKCNKSFTSKD 24
                  89*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533351.19E-1858178IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1509.5E-1873175IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024401.72E-693175No hitNo description
PfamPF136491.4E-1294177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0080167Biological Processresponse to karrikin
GO:0010287Cellular Componentplastoglobule
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNLPAIYRSG FKCSKCNKSF TSKDVFLDLT VTSGMKQYSE LKPARTELFR SPLVSFLYER  60
GWRQNFNRSG FPGRDEEFQM AQDYFQSVAG GILVDVSCGS GLFSRKFASS GAYSSVIALD  120
FSENMLRQCY DYIKQEETPM NTWNLALVRA DISRLPFASC SIDAIHAGAA IHCWPSPSNA  180
R
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37646.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3603980.0AK360398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1117E13.
GenBankAK3629470.0AK362947.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011I22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170885.11e-128uncharacterized methyltransferase At2g41040, chloroplastic-like isoform X2
SwissprotQ0WPT76e-95Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBLM0VVI41e-128M0VVI4_HORVV; Uncharacterized protein
STRINGMLOC_37646.11e-129(Hordeum vulgare)
Publications ? help Back to Top
  1. Vidi PA, et al.
    Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.
    J. Biol. Chem., 2006. 281(16): p. 11225-34
    [PMID:16414959]
  2. Ytterberg AJ,Peltier JB,van Wijk KJ
    Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
    Plant Physiol., 2006. 140(3): p. 984-97
    [PMID:16461379]
  3. Lundquist PK, et al.
    The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
    Plant Physiol., 2012. 158(3): p. 1172-92
    [PMID:22274653]