PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37647.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 203aa    MW: 23477.7 Da    PI: 10.2879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37647.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08123169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       WT eE + lvd++  +G ++W++  ++      Rt+ ++k++w+++
     MLOC_37647.1 123 HWTSEEVKELVDGISVYGDRQWTKLKNERFpiSVRTAVHLKDKWRNL 169
                      6***********************9876545*77***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.494116174IPR017930Myb domain
SuperFamilySSF466891.35E-11118172IPR009057Homeodomain-like
SMARTSM007172.5E-4120172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-10123171IPR009057Homeodomain-like
PfamPF002496.8E-6123169IPR001005SANT/Myb domain
CDDcd116602.64E-15124171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTIQRHVPAQ PEVLLEREEA PATTTLNGGG EAKAEEEMKE GGWAMYPPPC HRRSRRLACT  60
ATPPEEWTCD LLDYIPKSGW RHGSRVRSAR ERGTWSINIK PCFRDLHSAS VGQKHGRRRN  120
NDHWTSEEVK ELVDGISVYG DRQWTKLKNE RFPISVRTAV HLKDKWRNLV KAFTGNVKRR  180
ISPRLDKDCV EKIQRLAADY PRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189262.11e-97uncharacterized protein LOC109774912
TrEMBLA0A287XVQ91e-148A0A287XVQ9_HORVV; Uncharacterized protein
TrEMBLA0A287XW141e-148A0A287XW14_HORVV; Uncharacterized protein
STRINGMLOC_37647.21e-149(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.12e-11TRF-like 3