PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37780.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 200aa    MW: 22963.7 Da    PI: 11.2987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37780.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-1775122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
     MLOC_37780.1  75 RGLWSPEEDEKLMNHIAMYGHGCWSSVPKLAGLERCGKSCRLRWINYL 122
                      788*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-2667125IPR009057Homeodomain-like
PROSITE profilePS5129424.00370126IPR017930Myb domain
SMARTSM007178.6E-1374124IPR001005SANT/Myb domain
PfamPF002491.1E-1575122IPR001005SANT/Myb domain
SuperFamilySSF466895.59E-2277151IPR009057Homeodomain-like
CDDcd001673.44E-1178122No hitNo description
PROSITE profilePS500905.575123168IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-9126150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTYLRATAR PLPSRPLLLL SPSPYTSASP SPRCHHRVSI LVQPFVSRIS WRHLTADCRS  60
AMAKQSCFHK KRMRRGLWSP EEDEKLMNHI AMYGHGCWSS VPKLAGLERC GKSCRLRWIN  120
YLRPDLKRGT FSQEEEDLII RLHSMLGNKY VTWPVFQQSI ELQMTSNCIS ISGGHRLRPS  180
CPAGRTTKSR TSGIRTSRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-157315125102MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550240.0AK355024.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1014N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF2CTS21e-144F2CTS2_HORVV; Predicted protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.16e-47myb domain protein 50