PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_38133.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 412aa MW: 47539.2 Da PI: 10.2343

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_38133.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.9e-09	389	411	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr+++++ +C+y ++CkF+Hg MLOC_38133.1 389 KACRYYQQGLWCPYEGSCKFSHG 411 57****88**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.953	385	412	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-5	386	411	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.2E-5	388	411	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-6	389	411	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MNQISSQTVV PQQKVVSTDT VDQRFNKGRT DSLQQGEPEK ARQQQLSSKQ NPAVHLFHQQ 60 FLNQGPSVQH GKPEKTRQQQ ILARPSPAQQ IFKHPAQHDN HRPTPALQMF KNPQGHNNQL 120 QQQNKVLPQV GTTKTFSILG QAPCLQYGGS GNAVQQQKLS KPTPTEQIRN QSQPLKHEHQ 180 NLVLPQEDAK KGTNKVHSID HGKAPCLQYV GSGNARQQQS SRLALPQQIK NPPQPPKHQH 240 TEVLRQEDGN RTYRVEPVDR QNNNYHNTRY DVTAFQRHGT QHAKTHQHGS NGHPYAHVDS 300 QWHQPLRPRI QDFSSRNQEG DYRDHRQTTR EQYNPQGRHH HNQYGHGQMI QDQYQPQKTH 360 HQNGHDSWRM NHNQYHPQEN HAQQFPAPKA CRYYQQGLWC PYEGSCKFSH GS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MNQISSQTVV PQQKVVSTDT VDQRFNKGRT DSLQQGEPEK ARQQQLSSKQ NPAVHLFHQQ  60
FLNQGPSVQH GKPEKTRQQQ ILARPSPAQQ IFKHPAQHDN HRPTPALQMF KNPQGHNNQL  120
QQQNKVLPQV GTTKTFSILG QAPCLQYGGS GNAVQQQKLS KPTPTEQIRN QSQPLKHEHQ  180
NLVLPQEDAK KGTNKVHSID HGKAPCLQYV GSGNARQQQS SRLALPQQIK NPPQPPKHQH  240
TEVLRQEDGN RTYRVEPVDR QNNNYHNTRY DVTAFQRHGT QHAKTHQHGS NGHPYAHVDS  300
QWHQPLRPRI QDFSSRNQEG DYRDHRQTTR EQYNPQGRHH HNQYGHGQMI QDQYQPQKTH  360
HQNGHDSWRM NHNQYHPQEN HAQQFPAPKA CRYYQQGLWC PYEGSCKFSH GS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_38133.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374966	0.0	AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151518.1	0.0	zinc finger CCCH domain-containing protein 62-like isoform X2
TrEMBL	M0VX95	0.0	M0VX95_HORVV; Uncharacterized protein
STRING	MLOC_38133.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13107	20	22