PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38232.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 600aa    MW: 65937.5 Da    PI: 8.5423
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38232.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.6e-2533134199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +++e
  MLOC_38232.1  33 FCKTLTASDTSTHGGFSVPRRAAEDCfahldyKQV-RPSQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDGE 126
                   99****************************97444.34579************************************************..348999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++v+r+
  MLOC_38232.1 127 LRLGVRRA 134
                   9***9996 PP
2Auxin_resp104.51.3e-34159239182
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                   +a++++++s+F+v++ Pr+++seF+v++++++k+l++ +s+GmRfk++ e++d++er+ +G+++g+s++dp+rWp SkWr+L
  MLOC_38232.1 159 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHTFSIGMRFKVSNESDDANERS-TGLISGISEVDPIRWPASKWRCL 239
                   578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-4124159IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-3828136IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-2131133No hitNo description
SMARTSM010191.4E-2133135IPR003340B3 DNA binding domain
PfamPF023627.8E-2333134IPR003340B3 DNA binding domain
PROSITE profilePS5086313.23933135IPR003340B3 DNA binding domain
PfamPF065071.8E-28160239IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MFRQSVRERG SEEGEDEMAA GDGENKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA  60
HLDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL  120
RGDDGELRLG VRRAVQLRNE ALFEAVNTND SKLHTLSAVA SSLENRSIFH VCFDPRSGAS  180
EFIVPYWRFS KSLNHTFSIG MRFKVSNESD DANERSTGLI SGISEVDPIR WPASKWRCLM  240
VRWDDSTHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR AKLYFPQGNL DAPVTDGNGC  300
LDSMEAGNFH RVLQGQELLM GSRTQGAGRS QSPDVARFRP PDHIRFSANV RNYIPQQSSE  360
FPYHSSGFGE SVRFSEVLQG QEMSQALRFY QGSAFDARTQ HGGAGPFGYT QRSAAPIGLS  420
PAAQGYPLNQ FTPSAVAAAK VSSPSSVLMF NQATVPQFDL ESRTSSYIGA YGGQCRPMEM  480
VRETEKTWPC AQRQRPSVTG TGCRRFEEWI KASTPASTDG SRPGSAAARD VVVGRSNCRL  540
FGFSLTDQKA VGGAGGDGGA NEGNSNDEQD CADPRVLDLF GRGHHAPSAM RAIVAAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-7131261122353Auxin response factor 1
4ldy_B2e-7131261122353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38232.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574870.0AK357487.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188126.10.0auxin response factor 14-like
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A287GBB40.0A0A287GBB4_HORVV; Auxin response factor
STRINGMLOC_38232.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-123ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]