PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38232.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 333aa    MW: 37558.1 Da    PI: 9.6872
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38232.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-1930943399
                  -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +++el+++v+r+
  MLOC_38232.5 30 SQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDGELRLGVRRA 94
                  569************************************************..3489999****996 PP
2Auxin_resp105.85.1e-35119199182
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                   +a++++++s+F+v++ Pr+++seF+v++++++k+l++ +s+GmRfk++ e++d++er+ +G+++g+s++dp+rWp SkWr+L
  MLOC_38232.5 119 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHTFSIGMRFKVSNESDDANERS-TGLISGISEVDPIRWPASKWRCL 199
                   578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.8E-7795IPR003340B3 DNA binding domain
SuperFamilySSF1019363.27E-2317121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-232396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-132893No hitNo description
PfamPF023621.1E-162994IPR003340B3 DNA binding domain
PROSITE profilePS5086311.3643095IPR003340B3 DNA binding domain
PfamPF065077.1E-29120199IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
HEHAWRFLCS SPGCGGLFRT SGDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT  60
GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLRNE ALFEAVNTND SKLHTLSAVA  120
SSLENRSIFH VCFDPRSGAS EFIVPYWRFS KSLNHTFSIG MRFKVSNESD DANERSTGLI  180
SGISEVDPIR WPASKWRCLM VRWDDSTHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR  240
AKLYFPQGNL DAPVTDGNGC LDSMEAGNFH RVLQGQELLM GSRTQGAGRS QSPDVARFRP  300
PDHIRFSANV RNYIPQQSSE FPYHSSGFGE SVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-5423221188388Auxin response factor 5
4ldv_A2e-5423221154353Auxin response factor 1
4ldw_A2e-5423221154353Auxin response factor 1
4ldw_B2e-5423221154353Auxin response factor 1
4ldx_A2e-5423221154353Auxin response factor 1
4ldx_B2e-5423221154353Auxin response factor 1
4ldy_A2e-5423221154353Auxin response factor 1
4ldy_B2e-5423221154353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38232.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574870.0AK357487.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188126.10.0auxin response factor 14-like
SwissprotQ0DGS11e-161ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A287GBB40.0A0A287GBB4_HORVV; Auxin response factor
TrEMBLA0A287GBD10.0A0A287GBD1_HORVV; Auxin response factor
STRINGMLOC_38232.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.16e-99ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]