PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38420.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 252aa    MW: 28636.3 Da    PI: 8.7222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38420.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015136155322
                   ETTTTEEESSHHHHHHHHHH CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                   C++C+  ++++s+L +H+r 
  MLOC_38420.2 136 CSICDANCTSQSDLANHLRG 155
                   ******************96 PP
2zf-C2H214.20.00013196219223
                   EETTTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                    C++C+  ++++s+L +H+r+  H
  MLOC_38420.2 196 MCSICSANCKSQSDLSSHLRSrrH 219
                   7*******************8666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-961106No hitNo description
SMARTSM004516.4E-470104IPR003604Zinc finger, U1-type
SMARTSM003550.0357397IPR015880Zinc finger, C2H2-like
PfamPF128742.9E-87397No hitNo description
PROSITE patternPS0002807597IPR007087Zinc finger, C2H2
SuperFamilySSF576673.53E-10126167No hitNo description
SMARTSM004516.9E-6131165IPR003604Zinc finger, U1-type
SMARTSM003550.35134158IPR015880Zinc finger, C2H2-like
PfamPF128748.8E-8134158No hitNo description
PROSITE patternPS000280136158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-9177228No hitNo description
SMARTSM004514.4E-5192226IPR003604Zinc finger, U1-type
SMARTSM003550.37195219IPR015880Zinc finger, C2H2-like
PfamPF128749.2E-7195219No hitNo description
PROSITE patternPS000280197219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPRHGTSPLP HDEPRDVPVP LARRPVKDRI EEWYQPPWCS LASEEDEPMV GAKRHKNALS  60
GVKRKRTAED PSWICSMCDA KCYNETDLQN HLRGRRHQEN IEALQGQDKG AEARLHEKGV  120
AQLADKNLKP VSKWLCSICD ANCTSQSDLA NHLRGRRHQR KIEAFQGEGK GSEARLHEKN  180
MPLLADNNQK QVPRWMCSIC SANCKSQSDL SSHLRSRRHQ ENIEAFQGEG KGSEAMLHEK  240
KMPQLAEGTK RT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172345.11e-147zinc finger protein 64 homolog, isoforms 1 and 2-like
TrEMBLM0VY391e-179M0VY39_HORVV; Uncharacterized protein
STRINGMLOC_38420.11e-180(Hordeum vulgare)