PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38425.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 85aa    MW: 9633.89 Da    PI: 7.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38425.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-0712521554
                  HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
           HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                  +iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  MLOC_38425.1 12 EINELISKLQALLPESSrRRSASRSSASKLLKETCGYIKSL 52
                  7**************6647777779999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.743152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-91176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-51252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRGRITD EEINELISKL QALLPESSRR RSASRSSASK LLKETCGYIK SLHQEVDDLS  60
DRLSELMSTL DETSPQAEII RSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38425.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601311e-142AK360131.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187115.17e-42transcription factor ILI3
SwissprotA2XD151e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R471e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLF2D8B97e-51F2D8B9_HORVV; Predicted protein
STRINGTraes_4BL_24D87D874.15e-51(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-24bHLH family protein