PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3853.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 189aa    MW: 20805.4 Da    PI: 8.3724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3853.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY581.9e-18124188259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S....SSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa....edpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK +  + fpr YYrC ++   +Cp++k v++++     d+++ +++Y  eH+++
  MLOC_3853.1 124 SDGYQWRKYGQKRIMRTSFPRCYYRCCYHrerSCPATKLVQQQQphgdGDQTMYNVIYVHEHTCD 188
                  7**************************998999********9863333588999********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-21113188IPR003657WRKY domain
SuperFamilySSF1182901.14E-18117188IPR003657WRKY domain
PROSITE profilePS5081115.847118186IPR003657WRKY domain
SMARTSM007746.3E-24123189IPR003657WRKY domain
PfamPF031063.7E-21125188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQAQSRLIMN PNVGVAGYDD SAAADEQHKA VLRELTHGHE LTAHLQAEAL RALRGQGQAE  60
ATAALILQEV SRAFSVCISI MGGSAPAAPP PDATPVVATG AASARRPRDD GVPRKVTVTS  120
SPYSDGYQWR KYGQKRIMRT SFPRCYYRCC YHRERSCPAT KLVQQQQPHG DGDQTMYNVI  180
YVHEHTCDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063900.0JQ806390.1 Hordeum vulgare WRKY transcript factor 49 (WRKY49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186012.11e-106probable WRKY transcription factor 41
TrEMBLA0A287LWL91e-139A0A287LWL9_HORVV; Uncharacterized protein
STRINGMLOC_3853.11e-139(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.14e-11WRKY DNA-binding protein 54