PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3853.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 162aa    MW: 17563.9 Da    PI: 9.494
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3853.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.63.3e-10124146224
                  --SS-EEEEEEE--TT-SS-EEE CS
         WRKY   2 dDgynWrKYGqKevkgsefprsY 24 
                  +Dgy+WrKYGqK +  + fprs 
  MLOC_3853.2 124 SDGYQWRKYGQKRIMRTSFPRSV 146
                  7********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-9112146IPR003657WRKY domain
SuperFamilySSF1182903.53E-8117145IPR003657WRKY domain
PROSITE profilePS508119.706118155IPR003657WRKY domain
PfamPF031061.3E-7125153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQAQSRLIMN PNVGVAGYDD SAAADEQHKA VLRELTHGHE LTAHLQAEAL RALRGQGQAE  60
ATAALILQEV SRAFSVCISI MGGSAPAAPP PDATPVVATG AASARRPRDD GVPRKVTVTS  120
SPYSDGYQWR KYGQKRIMRT SFPRSVHFYI SRRLCCLSYP DN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3853.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063900.0JQ806390.1 Hordeum vulgare WRKY transcript factor 49 (WRKY49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186012.11e-77probable WRKY transcription factor 41
TrEMBLA0A287LWI81e-117A0A287LWI8_HORVV; Uncharacterized protein
STRINGMLOC_3853.11e-100(Hordeum vulgare)