PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38864.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 157aa    MW: 17293.2 Da    PI: 7.076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38864.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06126148123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C++Cg++F ++  +  H+++H
  MLOC_38864.2 126 YTCKICGRTFITSQAYGGHMSSH 148
                   9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.65E-6123153No hitNo description
PfamPF121711.0E-5125154IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0099126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVWHEDILSN PLSNYVDSYH HMNTSSMESP SFTSSLRADP NSIVYTHLNT TRALEDGSIS  60
EMPTRNGFEN MQNGRLRYDA SYGAPAPISP LMMSSHVQTE DKTPPVGPNG IFDSAILHDS  120
TTSGKYTCKI CGRTFITSQA YGGHMSSHAK AKKHLHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38864.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0VZD81e-114M0VZD8_HORVV; Uncharacterized protein
STRINGMLOC_38864.11e-108(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-06C2H2-like zinc finger protein