PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3915.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 211aa    MW: 23343.4 Da    PI: 9.9796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3915.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-102777454
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 a +e+Er RR++++   ++L +l+Pk  +  +  K+s  + L +A  YIk+L
  MLOC_3915.1 27 ARKEVERERRQHMKVLCAKLVSLIPKeHF-SNPDKMSQLDRLDEAASYIKKL 77
                 779***********************776.55589***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-121791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9282377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-62481No hitNo description
Gene3DG3DSA:4.10.280.103.0E-132793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-72777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-62983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEVQAHEATG RRRGRTSGGT TAARVVARKE VERERRQHMK VLCAKLVSLI PKEHFSNPDK  60
MSQLDRLDEA ASYIKKLKER VDELQHRRSS MQAMAAARGT SRTSTHTTTP TTSGGPGSPE  120
GEKHWEASVP VVEVRQHSDT SMDVVLVCST QRPIMLHEVI TILEEEGADV VNANQSVAGH  180
NIFYTIHTQA FSPRIGIDVS SVSGRLRALV R
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3915.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190842.11e-100uncharacterized protein LOC109776589
TrEMBLM0VZZ81e-153M0VZZ8_HORVV; Uncharacterized protein
STRINGMLOC_3915.11e-154(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.15e-12bHLH family protein