PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_39421.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 360aa    MW: 37747.1 Da    PI: 7.4504
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_39421.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67e-18259293135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  MLOC_39421.1 259 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 293
                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16253303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227257289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13257291IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-14257317No hitNo description
CDDcd002029.43E-14258305No hitNo description
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15259293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASEWEMAMG VELGMGMGSY HNAANVNAAP MSHQSGGYSA SAAAHHFYGM QPMRDANMRV  60
DELMDHFPSA GAHDFFPAAP DNGLHHHQHL GAAVGELSAT TPSATSSDHQ TSMLSFADEF  120
YIPSEEAAEL EWLSKFVDDS YSDMPNYSSA AHAAMAAANA ANNSGGGSAA GPDSCVTALP  180
GRGARSKRSR ASAAAAAAWH SLMPRPPSQP SPSSSCSSSD LPSSTTARPS GSNCGGRGKK  240
QGPVACGEVG LVEGGVRRCT HCASEKTPQW RTGPLGPKTL CNACGVRFKS GRLVPEYRPA  300
ASPTFLLTQH SNSHRKVMEL RRQKELVLIR GSHRLDAAAA GPGPGVTVKP ELMFHDYGIC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_39421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156316.11e-175GATA transcription factor 2-like
SwissprotO497414e-59GATA2_ARATH; GATA transcription factor 2
TrEMBLM0W0E70.0M0W0E7_HORVV; GATA transcription factor
STRINGMLOC_39421.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.15e-41GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]