PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_39539.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 81aa    MW: 8560.68 Da    PI: 9.6626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_39539.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-053759123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cg+ F     L  H+r+H
  MLOC_39539.1 37 HQCHVCGQGFEMGQALGGHMRRH 59
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-73463No hitNo description
PfamPF139121.1E-103662IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3883764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
GGHRTSHLRG RNGLALALAG TGTGPEQKKA TDQKQAHQCH VCGQGFEMGQ ALGGHMRRHR  60
EQEAASAAVA QPPPVLLELF V
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_39539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766801e-135AK376680.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3131H24.
GenBankEU8125631e-135EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198422.18e-35zinc finger protein ZAT8-like
RefseqXP_020199617.18e-35zinc finger protein ZAT8-like
TrEMBLA0A287SRY92e-51A0A287SRY9_HORVV; Uncharacterized protein
TrEMBLF2EKK32e-51F2EKK3_HORVV; Predicted protein
STRINGMLOC_39539.11e-51(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-11C2H2 family protein