PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_39632.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family DBB
Protein Properties Length: 389aa    MW: 42024.8 Da    PI: 7.0772
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_39632.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.51e-06133175541
      zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                    C+ ++   ++  C  ++  lC+ C +e+H        H++ p
  MLOC_39632.1 133 QCDSCGVAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 175
                   7*****999*********************6678888888877 PP
2zf-B_box26.31.5e-08182214234
      zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 
                   + ++C+ ++ek + +fC +++ l+C+dC + +H
  MLOC_39632.1 182 KLPRCDICQEKAAFIFCVEDRALFCRDCDEPIH 214
                   5789**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.1E-12129176IPR000315B-box-type zinc finger
PROSITE profilePS501199.712129176IPR000315B-box-type zinc finger
CDDcd000213.08E-5132176No hitNo description
SMARTSM003363.8E-14181228IPR000315B-box-type zinc finger
PROSITE profilePS501198.731181228IPR000315B-box-type zinc finger
PfamPF006431.1E-6182224IPR000315B-box-type zinc finger
CDDcd000213.20E-6184214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MYVFGACAES AESGSKYQTK SKSRPVPCCF SVGYNHPRSA RVHEFPAASF PPQAHLPPSC  60
LLLAAALSHC RGCVHGPALI CTTRARLLLD PSPHCQSRLP FFLAAPLSLL RLKPSKALSG  120
QRESKKSRGM KIQCDSCGVA AATVVCCADE AALCARCDVE IHAANKLASK HQRLPLDALG  180
AKLPRCDICQ EKAAFIFCVE DRALFCRDCD EPIHVPGTLS GNHQRYLATG IRVGLGPVST  240
CAAGDHGASH DADHHAPPKV ACDHQPPAQP AASAQQVPSP PQFLPQDWAV DELLQFSDYE  300
SSDKLHKDST LGFKELEWFT ADMELFHDHA PKGGRAAMEV PEFFASQAAD DAAYYRQSRV  360
AATAGVRQSK KARVEIADDE DFFIVPDLG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_39632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590680.0AK359068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1088K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173021.11e-179B-box zinc finger protein 25-like
SwissprotQ9SID11e-68BBX25_ARATH; B-box zinc finger protein 25
TrEMBLF2D5A80.0F2D5A8_HORVV; Predicted protein
STRINGMLOC_39632.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.13e-56DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]