PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_40486.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 171aa    MW: 18729.1 Da    PI: 11.5427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_40486.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1994142355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr+++ +g+++AeIrdps    rkr +lg+f+taeeAa+ ++ a+++l+g
  MLOC_40486.1  94 FRGVRRRP-WGKYAAEIRDPSL---RKRLWLGTFDTAEEAAAVYDDAALRLKG 142
                   8*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3693156IPR001471AP2/ERF domain
PROSITE profilePS5103222.41893150IPR001471AP2/ERF domain
PfamPF008473.8E-1194142IPR001471AP2/ERF domain
PRINTSPR003673.6E-1094105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-2994151IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2094151IPR016177DNA-binding domain
CDDcd000189.85E-23101149No hitNo description
PRINTSPR003673.6E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGLSSSDSLA AGRTRRVGFL APGPKRVRVF FVDADATESD SSGDEGVKRD KLRVREIIDI  60
SVKASSLTSP APSFPRRQAL ARRRVAKAGD RRPFRGVRRR PWGKYAAEIR DPSLRKRLWL  120
GTFDTAEEAA AVYDDAALRL KGSRAVTNFS SSSSSDSDYV SSTKPRSPPQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2092149462ATERF1
3gcc_A3e-2092149462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_40486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3661980.0AK366198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637513.12e-49ethylene-responsive transcription factor 3
TrEMBLF2DQN05e-91F2DQN0_HORVV; Predicted protein
STRINGMLOC_40486.11e-115(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-13cytokinin response factor 4