PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_40535.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 155aa    MW: 17098.2 Da    PI: 5.2978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_40535.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-1498144354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  MLOC_40535.1  98 VSHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYITEL 144
                   589************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.20595144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1696153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-1298149No hitNo description
PfamPF000102.6E-1198144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1699154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDELLSPCSP FFPPSPPTQF STAEGSHHQL LEFASCEVPE QWLLGDTAVP AKSEDVDFLW  60
PAGSSSLSPD SELPPASTTT PTKRRGRKPV PRPDGLTVSH VEAERQRRDK LNRRFCDLRA  120
AVPTVSRMDK ASLLADAVAY ITELRSRVAR LEEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-2298154763Transcription factor MYC2
5gnj_B8e-2298154763Transcription factor MYC2
5gnj_E8e-2298154763Transcription factor MYC2
5gnj_F8e-2298154763Transcription factor MYC2
5gnj_G8e-2298154763Transcription factor MYC2
5gnj_I8e-2298154763Transcription factor MYC2
5gnj_M8e-2298154763Transcription factor MYC2
5gnj_N8e-2298154763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_40535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269714e-59KJ726971.1 Zea mays clone pUT3672 bHLH transcription factor (bHLH95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194713.16e-83transcription factor bHLH14-like
TrEMBLA0A287RYK01e-107A0A287RYK0_HORVV; Uncharacterized protein
STRINGMLOC_40535.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-20bHLH family protein