PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_40602.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 144aa    MW: 15693.8 Da    PI: 8.6808
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_40602.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.64.2e-22131365128
           NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +r +Pt+ e v++yL + +++++l+ +e  i++v+i  +eP+dL +      + +a++ + +fF+++++k+ ++ ++ r++  g+W  + k++++ +
  MLOC_40602.1  13 YRLNPTEVEAVTYYLPRLLSSDTLHGAEKlIHDVEISGCEPKDLAAryapapQ-AAGSGDRFFFTTSKSKNGSKLQSVRSAGGGTWTIQ-KTTQISH 107
                   699********************7766655**************853555322.2244488*************************976.5678888 PP

           NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     g++vg  k L f     +kg++t Wvm+eyr 
  MLOC_40602.1 108 -AGSKVGEVKNLSFK----KKGKSTGWVMEEYRC 136
                   .8899*********8....78899********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.9299144IPR003441NAC domain
PfamPF023657.2E-1412135IPR003441NAC domain
SuperFamilySSF1019411.18E-2013140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEGLDVDGIF QHYRLNPTEV EAVTYYLPRL LSSDTLHGAE KLIHDVEISG CEPKDLAARY  60
APAPQAAGSG DRFFFTTSKS KNGSKLQSVR SAGGGTWTIQ KTTQISHAGS KVGEVKNLSF  120
KKKGKSTGWV MEEYRCLLPE ATVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_40602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732720.0AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152646.12e-88uncharacterized protein LOC109737913
RefseqXP_020159480.12e-88uncharacterized protein LOC109744740
TrEMBLA0A287W6B03e-99A0A287W6B0_HORVV; Uncharacterized protein
STRINGMLOC_40602.11e-104(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-14NAC domain containing protein 58