PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_40602.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 100aa    MW: 10678.9 Da    PI: 6.2329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_40602.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.81.2e-111395581
           NAM  5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg 81
                  +r +Pt+ e v++yL + +++++l+ +e  i++v+i  +eP+dL +      + +a++ + +fF+++++k+ ++ ++ r++  g
  MLOC_40602.2 13 YRLNPTEVEAVTYYLPRLLSSDTLHGAEKlIHDVEISGCEPKDLAAryapapQ-AAGSGDRFFFTTSKSKNGSKLQSVRSAGGG 95
                  699********************7766655**************853555322.2244478*******9999999988876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.9719100IPR003441NAC domain
SuperFamilySSF1019415.1E-101395IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEGLDVDGIF QHYRLNPTEV EAVTYYLPRL LSSDTLHGAE KLIHDVEISG CEPKDLAARY  60
APAPQAAGSG DRFFFTTSKS KNGSKLQSVR SAGGGTGACC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_40602.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732721e-155AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152646.11e-52uncharacterized protein LOC109737913
RefseqXP_020159480.11e-52uncharacterized protein LOC109744740
TrEMBLA0A287W6B02e-60A0A287W6B0_HORVV; Uncharacterized protein
STRINGMLOC_40602.19e-66(Hordeum vulgare)