PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_41071.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 250aa    MW: 26853.3 Da    PI: 5.38
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_41071.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.86.3e-4025247158373
          GRAS 158 leetgerLakfAeelgvpfefnvl................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                    ee+g rLa+fA++ gv++efnv+                v+++l ++  ++ +Lr++  Eal+Vn++  l ++       +  rd ++++v+ l P
  MLOC_41071.1  25 DEEIGLRLANFAKSKGVQLEFNVVnkstatstpspaklqtVCQELGSVlsDPPALRLRDSEALVVNCQSWLRHVA------PGSRDGFMDAVRALDP 115
                   589********************987777777766665554444444466777889999************9998......445778********** PP

          GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                    +v+v++++ad++s+s+++r++ ++++++ lfd+l++++pr+s  r   E++ +g++i++vv + g+e   r e+ ++  er+++ GF  v ++e++
  MLOC_41071.1 116 CLVTVTDEDADLDSPSLATRIAGCFNFHWILFDALDTSAPRDSPRRLEHEAA-VGQKIESVVGADGTE---RSESGARLAERMRRKGFAGVGFGEDE 208
                   **************************************************99.**************9...6777778889**************** PP

          GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   ++++++ll++++  g+ v+ e++ lvl+Wk+++ v+++aW
  MLOC_41071.1 209 VAEVRHLLSEHA-TGWGVKREEDMLVLTWKGHAAVFTTAW 247
                   ************.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.1011229IPR005202Transcription factor GRAS
PfamPF035142.2E-3725247IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
GGAPALRIPV PSVRPAGPPL LGVPDEEIGL RLANFAKSKG VQLEFNVVNK STATSTPSPA  60
KLQTVCQELG SVLSDPPALR LRDSEALVVN CQSWLRHVAP GSRDGFMDAV RALDPCLVTV  120
TDEDADLDSP SLATRIAGCF NFHWILFDAL DTSAPRDSPR RLEHEAAVGQ KIESVVGADG  180
TERSESGARL AERMRRKGFA GVGFGEDEVA EVRHLLSEHA TGWGVKREED MLVLTWKGHA  240
AVFTTAWAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-2026250253475Protein SHORT-ROOT
5b3h_B4e-2026250199421Protein SHORT-ROOT
5b3h_E4e-2026250199421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_41071.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154951.11e-170scarecrow-like protein 32
TrEMBLA0A287G0V31e-178A0A287G0V3_HORVV; Uncharacterized protein
STRINGMLOC_41071.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-53GRAS family protein