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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MLOC_41261.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 112aa MW: 12931.8 Da PI: 9.1904 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 42.8 | 1.8e-13 | 25 | 71 | 43 | 90 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+++kkt+k+r++++ +tgCkak++vk+ dg+wev++++ +HnH+l+
MLOC_41261.1 25 SKTKKTTKKRKRHTILQTGCKAKMVVKLI-DGRWEVIHFVGKHNHPLV 71
445557899999*****************.****************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.2E-11 | 25 | 71 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 112 aa Download sequence Send to blast |
MLDEIVDETK DDDQYEDIVF LDDDSKTKKT TKKRKRHTIL QTGCKAKMVV KLIDGRWEVI 60 HFVGKHNHPL VGTKYLRSHQ GIPVEEKKFL THPHNCNLTT GLNNTPSPLQ RA |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | MLOC_41261.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020158092.1 | 1e-25 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A287DZN6 | 3e-50 | A0A287DZN6_HORVV; Uncharacterized protein | ||||
| STRING | MLOC_41261.1 | 3e-78 | (Hordeum vulgare) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP9528 | 8 | 43 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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