PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4129.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 233aa    MW: 26450.8 Da    PI: 10.2918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4129.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3443.8e-14137228499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  v+++++v+ +  l+++ k++++h g++ +s   +   ++g++ +v+l   +k+++    +GW +F+++ngL++gD++++++ ++ +e +++v+++r+
  MLOC_4129.4 137 VMKKANVTGRFTLSMSMKYVRTHLGDEVRS---MWLERDGERCQVTL--GRKPQANRVVGGWVKFARDNGLRTGDVCLLERLRHrEECTMKVHIVRR 228
                  6888999999*************8887776...55668*********..9999999999*********************775559999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-15129227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15129227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-16132227No hitNo description
SMARTSM010190.0011134229IPR003340B3 DNA binding domain
PROSITE profilePS508639.164134229IPR003340B3 DNA binding domain
PfamPF023623.5E-12136228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCTMEVHIIH AKDFDRPSQI GGRNVKRRCK ETITKTVEPS HSRLQLVQMQ LHNASVEDSY  60
SRPQPMEMQS PSTERQIRVE TVNSCPGNEG DSSMSEDSVT LTGCMGVHLR SIPLIQKKLV  120
KQKVDLIGSK IPICVLVMKK ANVTGRFTLS MSMKYVRTHL GDEVRSMWLE RDGERCQVTL  180
GRKPQANRVV GGWVKFARDN GLRTGDVCLL ERLRHREECT MKVHIVRRVK LAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4129.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174612.11e-139putative B3 domain-containing protein Os08g0325100
TrEMBLM0W2H81e-168M0W2H8_HORVV; Uncharacterized protein
STRINGMLOC_4129.11e-169(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-10B3 family protein