PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_4129.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 216aa MW: 25138.2 Da PI: 7.6761

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_4129.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.2e-16	34	112	14	98
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++p +f++++ g+ ++++ le+++g s+++ + k++++ vl++GW Fvk +L+ D vvF+++g+s+f v +f+ MLOC_4129.5 34 QEMIVPDEFLRRFRGE--IPREINLETRNGHSYTIGV--AKYPDKLVLQAGWGVFVKTYDLRMDDCVVFRYKGNSQF--DVIIFD 112 5699*******776..6779***********..********************************9999..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-19	18	113	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-18	19	113	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.223	21	114	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-5	24	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-12	34	112	IPR003340	B3 DNA binding domain
CDD	cd10017	6.34E-15	36	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGCERCERRD ERDYCDLDDR EKHFLMFIVD GCGQEMIVPD EFLRRFRGEI PREINLETRN 60 GHSYTIGVAK YPDKLVLQAG WGVFVKTYDL RMDDCVVFRY KGNSQFDVII FDRFGREKAF 120 SVITENAPPV QESYNSGTEN LDRSHGHSSP WKCSRLLKMP TILKGVLSLW ECSHLLKMQT 180 LLMGILSPCE CNHLLKNWMI LLVLVGPRKC THLLKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_4129.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174612.1	5e-95	putative B3 domain-containing protein Os08g0325100
Swissprot	Q6Z0D9	5e-50	Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBL	A0A287DXJ0	1e-155	A0A287DXJ0_HORVV; Uncharacterized protein
STRING	Traes_4BS_5D04C29FF.2	1e-96	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-14	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]