PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_41788.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 82aa    MW: 9571.96 Da    PI: 8.3553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_41788.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00032449123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  y+C+   C++sF  k +L  H r  +
  MLOC_41788.1 24 YTCSieGCSMSFDMKNELSLHERHiC 49
                  99*******************99755 PP
2zf-C2H2171.7e-054771123
                  EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                  + Cp   Cgk F ++ +L +H  +H
  MLOC_41788.1 47 HICPvdGCGKKFFTHKHLLQHREVH 71
                  68*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-42346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355222446IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.79E-64673No hitNo description
SMARTSM003550.00594771IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7414776IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-84772IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804971IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MKQLKEARGE ERTPRDDPMR VEGYTCSIEG CSMSFDMKNE LSLHERHICP VDGCGKKFFT  60
HKHLLQHREV HTETTKQLKK AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-1723732272Lysine-specific demethylase REF6
6a58_A2e-1723732272Lysine-specific demethylase REF6
6a59_A2e-1723732272Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_41788.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.11e-40lysine-specific demethylase JMJ705-like
SwissprotQ5N7122e-22JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A287J4664e-50A0A287J466_HORVV; Uncharacterized protein
TrEMBLA0A287NI623e-50A0A287NI62_HORVV; Uncharacterized protein
STRINGMLOC_41788.14e-55(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-19relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]