PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_42254.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 70aa    MW: 7980.91 Da    PI: 8.2905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_42254.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-052850123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  + C++Cg  F +   L  H+r+H
  MLOC_42254.1 28 HDCHICGLGFETGQALGGHMRRH 50
                  56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.56E-62554No hitNo description
PfamPF139121.5E-102853IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7022855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
RGRHGLELGV GVARAIRERQ RREDKQQHDC HICGLGFETG QALGGHMRRH REEMALDRRV  60
ALSDQEAGHE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_42254.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591611e-107AK359161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090O23.
GenBankAK3666281e-107AK366628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198419.11e-36zinc finger protein ZAT5-like
TrEMBLA0A287SRS56e-40A0A287SRS5_HORVV; Uncharacterized protein
STRINGMLOC_42254.13e-41(Hordeum vulgare)
STRINGTraes_5BL_D53A846BE.12e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.11e-10C2H2 family protein