PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_42591.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 60aa    MW: 6615.81 Da    PI: 11.0659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_42591.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-082559948
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
           HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48
                   +rRR++iN+++  L++l+P+      +K++ +++Le+Av
  MLOC_42591.1 25 AKRRREKINDKLRVLQKLVPNG-----TKVDLSTMLEEAV 59
                  69******************97.....7999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4741660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-91859IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-92159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-62559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-62559No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
TVGVVCIVKA RAGRGPASNP QNLYAKRRRE KINDKLRVLQ KLVPNGTKVD LSTMLEEAVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_42591.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167813.16e-24transcription factor bHLH54-like
SwissprotQ3E7L72e-20BH139_ARATH; Transcription factor bHLH139
SwissprotQ84WK02e-20BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A287XA683e-34A0A287XA68_HORVV; Uncharacterized protein
STRINGMLOC_42591.11e-35(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3782123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.19e-23bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]