PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_42946.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 221aa    MW: 24021.4 Da    PI: 9.7973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_42946.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-143177455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++++k+Lq
  MLOC_42946.1 31 DHIMAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRHVKELQ 77
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.652776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-183194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-173194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-143281No hitNo description
SMARTSM003535.1E-153382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVYGSQPTRR AAARSPTGTG PVSSGPPYAQ DHIMAERKRR EKINQRFIEL STVIPGLKKM  60
DKATILSDAT RHVKELQEKI KALEAATGRS SRSIETVVLV KKPRNAAVSD QNGSPSSASS  120
GAPASRNRLP EIEVRFSENG VMVRIQCDDV KGVVVRVLSV VEQGLHLSVT HANVMPFTPC  180
TVIITITAKV DEGFTVTAEE IIGRLNYALE QHTSCTSTEE K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
23641RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_42946.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659950.0AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175444.11e-128transcription factor bHLH25-like
TrEMBLA0A287MYD01e-158A0A287MYD0_HORVV; Uncharacterized protein
STRINGMLOC_42946.11e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-39bHLH family protein