PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43041.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 219aa    MW: 24723.4 Da    PI: 10.5352
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43041.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.13.8e-072343121
           AP2  1 sgykGVrwdkkrgrWvAeIrd 21
                  s+y+GV++++++grW+++I+ 
  MLOC_43041.2 23 SQYRGVTFYRRTGRWESHIWS 43
                  78*****************97 PP
2AP224.18.9e-08951252055
           AP2  20 rdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   rd      + k+++lg f+ta+ Aa+a+++a+ k++g
  MLOC_43041.2  95 RD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 125
                   55......45************************997 PP
3AP227.39e-09168210147
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 
                   s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aak+ +
  MLOC_43041.2 168 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKLVD 210
                   789*******.7******77733....25**********668998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-162446IPR001471AP2/ERF domain
SMARTSM003801.3E-2324139IPR001471AP2/ERF domain
PROSITE profilePS5103215.48824133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1697132IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-997133IPR016177DNA-binding domain
SuperFamilySSF541718.5E-9168210IPR016177DNA-binding domain
CDDcd000183.79E-12168210No hitNo description
Gene3DG3DSA:3.30.730.101.6E-6169212IPR001471AP2/ERF domain
PROSITE profilePS510329.638169219IPR001471AP2/ERF domain
SMARTSM003805.9E-5169214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
AGAHWTRPLS RTKSRRGPRS RSSQYRGVTF YRRTGRWESH IWSVRHPPSP SKIHGDSRAS  60
NTIITQTVFP RSCIALVYIY LRISVSRPCV LPICRDCGKQ VYLGGFDTAQ AAARAYDQAA  120
IKFRGVEADI NFLLDDYKED IGKMSLLSKE ELVQVLRRQG AGFVRGSSRF RGVTLHKCGK  180
WEARIGQLMG KKFVYLGLYD TEMDAAKLVD TISSSFCAH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43041.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.15e-76ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH04e-77AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A287XXE01e-124A0A287XXE0_HORVV; Uncharacterized protein
STRINGOGLUM06G23380.11e-75(Oryza glumipatula)
STRINGMLOC_43041.12e-76(Hordeum vulgare)
STRINGORUFI06G23930.11e-75(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-58AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]