PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43041.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 152aa    MW: 17284.7 Da    PI: 10.0838
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43041.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18958155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  MLOC_43041.3  9 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 58
                  78*******************......55************************997 PP
2AP228.24.7e-09101143147
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 
                   s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aak+ +
  MLOC_43041.3 101 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKLVD 143
                   789*******.7******77733....25**********669998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-10958IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-16966IPR016177DNA-binding domain
SMARTSM003802.0E-301072IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-181065IPR001471AP2/ERF domain
PROSITE profilePS5103217.4381066IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-9101143IPR016177DNA-binding domain
CDDcd000187.34E-12101143No hitNo description
SMARTSM003805.9E-5102147IPR001471AP2/ERF domain
PROSITE profilePS510329.638102152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-7102145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAQAAARAYD QAAIKFRGVE  60
ADINFLLDDY KEDIGKMSLL SKEELVQVLR RQGAGFVRGS SRFRGVTLHK CGKWEARIGQ  120
LMGKKFVYLG LYDTEMDAAK LVDTISSSFC AH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43041.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.17e-83ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH06e-84AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A287XXE57e-85A0A287XXE5_HORVV; Uncharacterized protein
STRINGOGLUM06G23380.13e-82(Oryza glumipatula)
STRINGORUFI06G23930.13e-82(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-68AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]