PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43041.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 76aa    MW: 8509.93 Da    PI: 10.1175
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43041.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.49.4e-102567147
           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47
                  s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aak+ +
  MLOC_43041.5 25 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKLVD 67
                  789*******.7******77733....25**********669999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-42567IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-102568IPR016177DNA-binding domain
CDDcd000181.90E-132567No hitNo description
Gene3DG3DSA:3.30.730.101.5E-72669IPR001471AP2/ERF domain
PROSITE profilePS510329.6382676IPR001471AP2/ERF domain
SMARTSM003805.9E-52671IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MSLLSKEELV QVLRRQGAGF VRGSSRFRGV TLHKCGKWEA RIGQLMGKKF VYLGLYDTEM  60
DAAKLVDTIS SSFCAH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43041.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573931e-103AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657174.24e-35PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotA0A0N7KMH02e-35AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A287XXI92e-48A0A287XXI9_HORVV; Uncharacterized protein
STRINGTraes_7AL_2433E45D7.11e-37(Triticum aestivum)
STRINGTraes_7DL_7B0ABD21E.22e-36(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-31AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]