PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43041.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 259aa    MW: 27985.4 Da    PI: 6.9889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43041.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.2e-112571151
           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51
                  s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aaka+++a++
  MLOC_43041.6 25 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAAL 71
                  789*******.7******77733....25**********77*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-162583IPR016177DNA-binding domain
CDDcd000188.42E-122583No hitNo description
PfamPF008471.8E-62575IPR001471AP2/ERF domain
PROSITE profilePS5103214.3022683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-162683IPR001471AP2/ERF domain
SMARTSM003801.6E-252689IPR001471AP2/ERF domain
PRINTSPR003675.9E-52738IPR001471AP2/ERF domain
PRINTSPR003675.9E-56585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSLLSKEELV QVLRRQGAGF VRGSSRFRGV TLHKCGKWEA RIGQLMGKKF VYLGLYDTEM  60
DAAKAYDKAA LDCCGEEAMT NFEPKAAVAA CDGDLDLHSW GGEPDLELSL GCSGGGNPST  120
VTTGDTLRTA AAPGRQRTSL TFEMPEEEEA TAPWHPGRNR SIWIRPSPTS ITSGLRCPDG  180
DHRPAFTGSS MLHMCQIGGG GREEPHMPWW PTGSGVDRWQ PYGAEAAAAA SSGFPPAPGL  240
GGVQRLHQHR PGSREHLWR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43041.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151062.11e-135ethylene-responsive transcription factor RAP2-7-like
SwissprotA0A0N7KMH03e-68AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A287XX510.0A0A287XX51_HORVV; Uncharacterized protein
TrEMBLA0A287XXE00.0A0A287XXE0_HORVV; Uncharacterized protein
TrEMBLF2D0I60.0F2D0I6_HORVV; Predicted protein
STRINGMLOC_43041.11e-139(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-33AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]