PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43080.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 233aa    MW: 24705.9 Da    PI: 10.2811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43080.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-0737104455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLekAveYIksLq 55 
                     + +E++RR +++    +L +l+P as                ++++   +  + L  A  YI++L+
  MLOC_43080.2  37 ERKDVEKNRRLHMKGLCLKLSSLIPAASphhhlrhyspssssppSTNKDAATQLDQLDSAAAYINQLR 104
                   56789*********************888**************7777777****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.58833103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.72E-835116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-935114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKSRRQAGRG GAVAADGNHH HTTSSGEDTG RCNTKMERKD VEKNRRLHMK GLCLKLSSLI  60
PAASPHHHLR HYSPSSSSPP STNKDAATQL DQLDSAAAYI NQLRARIDGL KRRKQAALSG  120
GCSSSVSAGD YKPQTAAALP VIEVRHRDGT LDVALASEAG RPFRLHEVIA VMEQEGAEVV  180
SASFSVVGDK IFYTVHSQAL CPRIGLDAGR VAQRLRGLAA AAAAAVSSSV LLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43080.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-114HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183666.11e-120uncharacterized protein LOC109769325
TrEMBLA0A287JUX31e-167A0A287JUX3_HORVV; Uncharacterized protein
STRINGMLOC_43080.21e-169(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.14e-17bHLH family protein