PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4332.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 186aa    MW: 20314.1 Da    PI: 8.2769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4332.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH246.8e-08111151954
                  HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   r RR+r+ +++  L++l+P  a      +l+ a++Le+Av+Y++ L
  MLOC_4332.1 111 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAVRYVRFL 151
                  699*****************966......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.481102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.75E-10105156No hitNo description
Gene3DG3DSA:4.10.280.103.9E-11106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-12106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-11108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-5112151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDLDMAMDMT NQEQLMHTIS QLDSALTYLA SPSTSPPHEP PALVPPYPSC ATSAVTPSVV  60
TMPVLVPPPA AANPEHTATR QLVVGIHSAA DVERPRRRNG RVSSEPQSVA ARLRRERVSQ  120
RMRALQRLVP GGARLDTASM LEEAVRYVRF LKSHVQALEQ AAAAVHGRRV DDVAAGDFYH  180
HCPYHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046878e-64AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149628e-64AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156818.11e-106transcription factor HEC2-like
TrEMBLM0W4231e-130M0W423_HORVV; Uncharacterized protein
STRINGMLOC_4332.11e-131(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-25bHLH family protein