PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43537.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 249aa    MW: 26357.2 Da    PI: 4.1792
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43537.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.24.2e-24181230151
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  MLOC_43537.4 181 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGINSLTRHNIASHLQ 230
                   6799*****************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3178237IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-23179230IPR009057Homeodomain-like
SuperFamilySSF466892.51E-15179231IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23181231IPR006447Myb domain, plants
PfamPF002491.0E-6184230IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLAVSSARCL AADADEQRAE AAPMETVGGA AVVADLDIDF DFTVDDIDFG DFFLRLEDGD  60
ALPDLEVDPA DIFTDLEAAA AGVQELQDQQ VPCAFLAAVE DVGSVSSAGG VVGVENTAFG  120
EEGRLGDEKR GCNQAEVGEN MSGGDRPIVP DAKSPSSTTS SSTEAESRHK SSGKSSHGKK  180
KAKVDWTPEL HRRFVQAVEQ LGIDKAVPSR ILEIMGINSL TRHNIASHLQ VRAGMELETN  240
VKLNIDCSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15178230254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43537.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616230.0AK361623.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145D04.
GenBankAK3674950.0AK367495.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191527.11e-140probable transcription factor GLK1
SwissprotQ5Z5I42e-62GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLF2DCK61e-164F2DCK6_HORVV; Predicted protein
STRINGMLOC_43537.11e-165(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.13e-24GOLDEN2-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]