PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43575.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 367aa    MW: 41139.8 Da    PI: 9.3255
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43575.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-174190155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MLOC_43575.3 41 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 90
                  78*******************......55************************998 PP
2AP241.92.4e-13133183155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  MLOC_43575.3 133 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 183
                   89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-164199IPR016177DNA-binding domain
PfamPF008471.5E-94190IPR001471AP2/ERF domain
CDDcd000187.77E-1141100No hitNo description
Gene3DG3DSA:3.30.730.102.5E-174299IPR001471AP2/ERF domain
PROSITE profilePS5103217.6224298IPR001471AP2/ERF domain
SMARTSM003801.0E-3142104IPR001471AP2/ERF domain
CDDcd000183.44E-25133193No hitNo description
PfamPF008477.3E-9133183IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-17133192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-16134192IPR001471AP2/ERF domain
PROSITE profilePS5103216.318134191IPR001471AP2/ERF domain
SMARTSM003802.4E-33134197IPR001471AP2/ERF domain
PRINTSPR003671.2E-6135146IPR001471AP2/ERF domain
PRINTSPR003671.2E-6173193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
QAPAPPPTAP VWQPRRAEEL VVAQRVAPKK KTRRGPRSRS SQYRGVTFYR RTGRWESHIW  60
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFNLS DYEEDLKQMR NWTKEEFVHI  120
LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDSEVEA ARAYDRAAIR  180
FNGRDAVTNF DSSSYNGDAT PDVENEAIVD ADALDLDLRM SQPTAHDPKR DNIIAGLQLT  240
FDSPESSTTM VSSQPMSSSS QWPVHQHGTA VPPQQHQRLY PSACHGFYPN VQVQVQERPL  300
EPRPPEPSSF PGWGWHAQAV PPGSSHSLLL YAAASSGFST AAGANPAPPP SYPDHHHRFY  360
FPRPPDN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43575.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550020.0AK355002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1014I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154436.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ84TB51e-154AP22_ORYSJ; APETALA2-like protein 2
TrEMBLF2CTQ00.0F2CTQ0_HORVV; Predicted protein
STRINGMLOC_43575.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-89AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]