PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43760.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 292aa    MW: 31640.9 Da    PI: 10.7479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43760.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19210260256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  MLOC_43760.1 210 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 260
                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-33209269No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32210268IPR001471AP2/ERF domain
SMARTSM003805.9E-39210273IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-23210268IPR016177DNA-binding domain
PROSITE profilePS5103222.998210267IPR001471AP2/ERF domain
PRINTSPR003673.9E-11211222IPR001471AP2/ERF domain
PfamPF008471.4E-12211260IPR001471AP2/ERF domain
PRINTSPR003673.9E-11233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDAADSGGGV RGRERRWKGK AASSAAEKQQ QQPLAPVLED APAAALLPPL KKMRSPDCRL  60
RRSVSSLSSA PASPDSSSVS NPLSPPATSL PPYASSTRQI FPFAYDPSPA AAPRLLQLLQ  120
YSSSLYQQPM LPQQQQHTPS QHPQMISFGD AQQQQQFEAA AALVPPQYMS PEALRYWSAA  180
LNLSPRGVLG GVVPPALYQH LLRPPGPAKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF  240
DTAEDAAMAY DREAFKLRGE NARLNFPDLF LGKGRSGGSG RTSASAAAAG PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20209267463ATERF1
3gcc_A2e-20209267463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674350.0AK367435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183709.11e-133ethylene-responsive transcription factor ERF054-like
TrEMBLA0A287UCD40.0A0A287UCD4_HORVV; Uncharacterized protein
STRINGMLOC_43760.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-38ERF family protein