PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43888.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 255aa    MW: 27522.9 Da    PI: 4.8501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43888.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-1190133755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er RR+r+N+++  +r ++P+      +K++Ka+i + Av YI +Lq
  MLOC_43888.3  90 VEERDRRRRLNEKLYAIRGVVPNI-----TKMDKASIIQDAVAYIEELQ 133
                   448********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1580148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1480147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.8583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-890133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-799137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSRAMEADMD ASLDFLELEA HLVFDLGSAA ADSKRWISLA DCCSSYLPAE DSLSGLDSSC  60
LNDSAGSPDG ATSSPSTAST RTTRESKNVV EERDRRRRLN EKLYAIRGVV PNITKMDKAS  120
IIQDAVAYIE ELQEQERRIL AEVSDLEAGG CTAVVKSEAS TGSEGVENAG VGFSRRKKMR  180
RTSSSSSIND AVASPATHPV EIFELEVTPI EEKLAVVSMR HNNTQHVMAK MYKALDSLCL  240
KVITSSVAVA DGRTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43888.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-94HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186745.11e-145transcription factor bHLH35-like
TrEMBLA0A287K0B30.0A0A287K0B3_HORVV; Uncharacterized protein
STRINGMLOC_43888.21e-178(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-29bHLH family protein