PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43901.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 167aa    MW: 18396.6 Da    PI: 9.481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43901.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-0681103223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ Cg++F+ +++L++H+ + H
  MLOC_43901.1  81 PCSQCGEVFTKPDTLEHHQAVrH 103
                   799****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.28680108IPR007087Zinc finger, C2H2
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MRDVATVDGA SSAASVVVDH RDTAPLNRSS RRAHHSSSSS SAGGGGGHPS SLRGLSGCYE  60
CRAINVEPVS RRYPRPRELC PCSQCGEVFT KPDTLEHHQA VRHAVSELGP EDSGRNIVEI  120
IFKSSWQKRD RPICHIDRIL KVRNPPRTVA RFEAYRDAVR ARCRADA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43901.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856071e-117BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166174.13e-88uncharacterized protein LOC109751701
TrEMBLA0A3B6U3A92e-91A0A3B6U3A9_WHEAT; Uncharacterized protein
STRINGMLOC_43901.11e-118(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-39C2H2-like zinc finger protein