PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43901.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 120aa    MW: 12753.1 Da    PI: 8.7781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43901.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-0681103223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ Cg++F+ +++L++H+ + H
  MLOC_43901.2  81 PCSQCGEVFTKPDTLEHHQAVrH 103
                   799****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.38880108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MRDVATVDGA SSAASVVVDH RDTAPLNRSS RRAHHSSSSS SAGGGGGHPS SLRGLSGCYE  60
CRAINVEPVS RRYPRPRELC PCSQCGEVFT KPDTLEHHQA VRHAGKFSKP AASIDAYSHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43901.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2268543e-41EU226854.1 Oryza barthii isolate H10 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268553e-41EU226855.1 Oryza meridionalis isolate H11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166174.11e-42uncharacterized protein LOC109751701
TrEMBLA0A446LQ613e-46A0A446LQ61_TRITD; Uncharacterized protein
STRINGMLOC_43901.17e-69(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-11C2H2-like zinc finger protein