PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43989.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 265aa    MW: 28833.1 Da    PI: 7.2052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43989.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.92.3e-5624264123374
          GRAS 123 lQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll 214
                   +QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg pfefn++   +l+++++ eL   + +E +aV+l +      
  MLOC_43989.1  24 GQWASFLQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTRDNLTQFAADLGTPFEFNAV---SLDAFSPAELISPTgDEIVAVSLPVGCSARA 117
                   8************976544599****************************************8...99********666689********9777665 PP

          GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                       +l+     +L+lvk+l Pk+vv ++  ad+ + +F ++fl++++ ++ l+dsl+a  + +++ + k+E++l++++++++v  + +       +
  MLOC_43989.1 118 ---PPLA----LILQLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLLDSLDAA-GIDADSACKIEKFLIQPRVEDAVLGRRKT-----DK 201
                   ...4454....5*********************************************888.7899*******************987776.....88 PP

          GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +++Wr+ + +aGF+pvpls+ a++qa++ll++v+++g++ve++  +l+l+W++ +LvsvSaWr
  MLOC_43989.1 202 AMSWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVALTLYWQRGELVSVSAWR 264
                   9*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.851244IPR005202Transcription factor GRAS
PfamPF035147.9E-5424264IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDTTAPPASP HRSTSPSSWR LTSGQWASFL QELAHRRGTG GVALPLLKLT AFVSDASHHP  60
LELHLTRDNL TQFAADLGTP FEFNAVSLDA FSPAELISPT GDEIVAVSLP VGCSARAPPL  120
ALILQLVKQL GPKIVVAMDY GADRADLPFS QHFLHCFQSC MFLLDSLDAA GIDADSACKI  180
EKFLIQPRVE DAVLGRRKTD KAMSWRNVFA AAGFTPVPLS NLAEAQADCL LKRVQVRGFH  240
VEKRGVALTL YWQRGELVSV SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1425264123375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.11e-167scarecrow-like protein 6
TrEMBLA0A446WGM10.0A0A446WGM1_TRITD; Uncharacterized protein
STRINGMLOC_43989.21e-173(Hordeum vulgare)
STRINGTraes_6DL_26DDCA106.11e-173(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-62GRAS family protein