PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43989.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 590aa    MW: 62651.4 Da    PI: 6.6342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43989.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.91.6e-852325893374
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + L ++A+a ++g+ + a+++Larl+++  p g+p+ R a+y+ eAL   la+      +  +p+ ts+ +++ +laa+k fs++sP+l+f+++ta 
  MLOC_43989.2 232 DELAAAAKAAEAGNSTGAREILARLNHQLPPLGKPFLRSASYLREALLLALAD-----GHHGAPRITSPLDVALKLAAYKSFSDLSPMLQFANFTAT 323
                   7899*************************************************.....6677888888889************************** PP

          GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   qa+l++++ +  +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg pfefn++   +l++++
  MLOC_43989.2 324 QALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTRDNLTQFAADLGTPFEFNAV---SLDAFS 417
                   *****988776699************************976544599****************************************8...99**** PP

          GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   + eL   + +E +aV+l +          +l+     +L+lvk+l Pk+vv ++  ad+ + +F ++fl++++ ++ l+dsl+a  + +++ + k+E
  MLOC_43989.2 418 PAELISPTgDEIVAVSLPVGCSARA---PPLA----LILQLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLLDSLDAA-GIDADSACKIE 506
                   ****666689********9777665...4454....5*********************************************888.7899******* PP

          GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++l++++++++v  + +       ++++Wr+ + +aGF+pvpls+ a++qa++ll++v+++g++ve++  +l+l+W++ +LvsvSaWr
  MLOC_43989.2 507 KFLIQPRVEDAVLGRRKT-----DKAMSWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVALTLYWQRGELVSVSAWR 589
                   ************987776.....889*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.934204569IPR005202Transcription factor GRAS
PfamPF035145.4E-83232589IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MLGSAAAAAA AGQDQTFLNW IMGAAGDLEL PVPPLPMHQQ PLVDNAGFGF SPVDPLGFSL  60
DHHLGGASSD LSSSGAMSHT TTGGGGGGGS KASSAFGLFS PEAASLQPPP PPMLFHEGID  120
TKPPLLGAHS HGLFNQYQHQ HQPPPPAATF FMPLSSFSDH NQRSQLHQPP PKRHHSVPDD  180
LYLTRNHLGP SAAATFPLLH GALPFQLQPS SPPLRGAMKT TAAEAAQQQL LDELAAAAKA  240
AEAGNSTGAR EILARLNHQL PPLGKPFLRS ASYLREALLL ALADGHHGAP RITSPLDVAL  300
KLAAYKSFSD LSPMLQFANF TATQALLDEI ACSAASCIHV IDFDLGVGGQ WASFLQELAH  360
RRGTGGVALP LLKLTAFVSD ASHHPLELHL TRDNLTQFAA DLGTPFEFNA VSLDAFSPAE  420
LISPTGDEIV AVSLPVGCSA RAPPLALILQ LVKQLGPKIV VAMDYGADRA DLPFSQHFLH  480
CFQSCMFLLD SLDAAGIDAD SACKIEKFLI QPRVEDAVLG RRKTDKAMSW RNVFAAAGFT  540
PVPLSNLAEA QADCLLKRVQ VRGFHVEKRG VALTLYWQRG ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-252305894375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43989.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.10.0scarecrow-like protein 6
TrEMBLA0A287UEX80.0A0A287UEX8_HORVV; Uncharacterized protein
STRINGMLOC_43989.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-89GRAS family protein