PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44012.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 227aa    MW: 24481.8 Da    PI: 10.0493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44012.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.41.9e-3050142186
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                   f+k+ tpsdv+k++rlv+pk+ ae+h       gg + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ 
  MLOC_44012.1  50 FDKTVTPSDVGKLNRLVIPKQNAEKHfplqlpaGGGESKGLLLNFEDDAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLGAGDVVGFYRSA 142
                   89*******************************77778999************************************************9653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-3846169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2948144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-2948154No hitNo description
SMARTSM010191.7E-2250149IPR003340B3 DNA binding domain
PROSITE profilePS5086313.46550160IPR003340B3 DNA binding domain
PfamPF023623.8E-2750142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLRKHTYFDE LAQSKRAFAA SAALSAPTTS GDAGGSASPP SPAAVREHLF DKTVTPSDVG  60
KLNRLVIPKQ NAEKHFPLQL PAGGGESKGL LLNFEDDAGK VWRFRYSYWN SSQSYVLTKG  120
WSRFVKEKGL GAGDVVGFYR SAAGRTGEDS KFFIDCRLRP NTNTAAEADP VDQSSAPVQK  180
AVRLFGVDLL AAPEQGMPGG CKRARDLVKP PPPKVAFKKQ CIELALA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-51441622116B3 domain-containing transcription factor NGA1
5os9_B1e-51441622116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696810.0AK369681.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185929.11e-119AP2/ERF and B3 domain-containing protein Os01g0693400-like
SwissprotQ8RZX91e-103Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A287LD431e-164A0A287LD43_HORVV; Uncharacterized protein
STRINGMLOC_44012.11e-166(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-55related to ABI3/VP1 2